Publications

Strain structure and dynamics revealed by targeted deep-sequencing of the honeybee gut microbiome

Bobay LM, Wissel EF, Raymann K. 2020. mSphere. 5 (4)

CoreCruncher: fast and robust construction of core genomes in large prokaryotic datasets.

Harris CD, Torrence EL, Raymann K, Bobay LM. 2020. Molecular Biology & Evolution. msaa224.

Pharmacological physiology, Microbiota, and Antimicrobial Resistance.

Raymann K. 2020. Honey Bee Veterinary Medicine. Wiley Press. In press

Population genetics of host-associated microbiomes

Bobay LM & Raymann K. 2019. Current Molecular Biology Reports. 5:128–139

Glyphosate perturbs the gut microbiota of honey bees

Motta EVS, Raymann K, Moran NA. 2018. Proceedings of the National Academy of Sciences USA.115:10305-10310

Pathogenicity of Serratia marcescens Strains in Honey Bees.

K Raymann, K Coon, Z Shaffer, S Salisbury, NA Moran. 2018. mBio. 9:e01649-18

Imidacloprid decreases honey bee survival but does not affect the gut microbiome

K Raymann*, EVS Motta*, C Girard*, IM Riddington, JA Dinser, NA Moran. 2018. Applied Environmental Microbiology AEM 00545-18

The role of the gut microbiome in health and disease of adult honey bee workers

K Raymann, NA Moran. 2018. Current Opinion in Insect Science 26, 97-104

Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome

K Raymann*, LM Bobay*, NA Moran. 2017. Molecular Ecology doi: 10.1111/mec.14434

Antibiotic exposure perturbs the gut microbiota and elevates mortality in honeybees

K Raymann, Z Shaffer, NA Moran. 2017. PLoS Biology 15 (3), e2001861

Unexplored Archaeal Diversity in the Great Ape Gut Microbiome

K Raymann, AH Moeller, AL Goodman, H Ochman. 2017. mSphere 2 (1), e00026-17

The two-domain tree of life is linked to a new root for the Archaea

K Raymann, C Brochier-Armanet, S Gribaldo. 2015. Proceedings of the National Academy of Sciences USA 112 (21), 6670-6675

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

AJ Probst, T Weinmaier, K Raymann, A Perras, JB Emerson, T Rattei, G Wanner, A Klingl, IA Berg, M Yoshinaga, B Viehweger, KU Hinrichs, BC Thomas, S Meck, AK Auerbach, M Heise, A Schintlmeister, M Schmid, M Wagner, S Gribaldo, JF Banfield, C Moissl-Eichinger. 2014. Nature communications 5

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

G Borrel, N Parisot, HMB Harris, E Peyretaillade, N Gaci, W Tottey, O Bardot, K Raymann, S Gribaldo, P Peyret, PW O’Toole, JF Brugère. 2014. BMC genomics 15 (1), 679

DNA topoisomerase VIII: a novel subfamily of type IIB topoisomerases encoded by free or integrated plasmids in Archaea and Bacteria

D Gadelle, M Krupovic, K Raymann, C Mayer, P Forterre. 2014. Nucleic acids research 42 (13), 8578-8591

Plasmids from Euryarchaeota

P Forterre, M Krupovic, K Raymann, N Soler. 2014. Plasmids: Biology and Impact in Biotechnology and Discovery 2, PLAS-0027-2014. doi:10.1128/microbiolspe

Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea

K Raymann, P Forterre, C Brochier-Armanet, S Gribaldo. 2013. Genome biology and evolution 6 (1), 192-212

A genomic survey of reb homologs suggests widespread occurrence of R-bodies in proteobacteria

K Raymann, LM Bobay, TG Doak, M Lynch, S Gribaldo. 2013. G3: Genes| Genomes| Genetics 3 (3), 505-516